IL_1O15_002

3D structure

PDB id

1O15 (explore in PDB, NAKB, or RNA 3D Hub)

Description

THEOPHYLLINE-BINDING RNA IN COMPLEX WITH THEOPHYLLINE, NMR, REGULARIZED MEAN STRUCTURE, REFINEMENT WITH TORSION ANGLE AND BASE-BASE POSITIONAL DATABASE POTENTIALS AND DIPOLAR COUPLINGS

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CAG*CCCUUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1O15_002 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2804

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

1O15|1|A|C|9
1O15|1|A|A|10
1O15|1|A|G|11
*
1O15|1|A|C|20
1O15|1|A|C|21
1O15|1|A|C|22
1O15|1|A|U|23
1O15|1|A|U|24
1O15|1|A|G|25

Current chains

Chain A

THEOPHYLLINE-BINDING RNA

Nearby chains