IL_1OLN_002

3D structure

PDB id

1OLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model for thiostrepton antibiotic binding to L11 substrate from 50S ribosomal RNA

Experimental method

SOLUTION NMR, THEORETICAL MODEL

Resolution

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

1OLN|1|C|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OLN_002 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.0003

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

1OLN|1|C|G|1087
1OLN|1|C|A|1088
1OLN|1|C|G|1089
1OLN|1|C|U|1090
1OLN|1|C|G|1091
*
1OLN|1|C|C|1100
1OLN|1|C|U|1101
1OLN|1|C|C|1102

Current chains

Chain C

RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L11