IL_1OND_007

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAACUGA*UCUCAGUAC

Length

17 nucleotides

Bulged bases

1OND|1|0|G|182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OND_007 not in the Motif Atlas

Geometric match to IL_3DIL_003

Geometric discrepancy: 0.3273

The information below is about IL_3DIL_003

Detailed Annotation

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_34470.3

Basepair signature

cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

Number of instances in this motif group

2

Unit IDs

1OND|1|0|G|165
1OND|1|0|G|166
1OND|1|0|A|167
1OND|1|0|A|168
1OND|1|0|C|169
1OND|1|0|U|170
1OND|1|0|G|171
1OND|1|0|A|172
*
1OND|1|0|U|177
1OND|1|0|C|178
1OND|1|0|U|179
1OND|1|0|C|180
1OND|1|0|A|181
1OND|1|0|G|182
1OND|1|0|U|183
1OND|1|0|A|184
1OND|1|0|C|185

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains