Motif IL_34470.3 Version IL_34470.3 of this group appears in releases 3.89 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-16 | 4-14 | 5-13 | 6-7 | 7-12 | 8-11 | 9-10 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3D0U_003 | 3D0U | 0.0000 | 0 | 9x8 Sarcin-Ricin with GA cWW pair; G-bulge | A | Lysine Riboswitch RNA | G | 19 | A | 20 | U | 21 | G | 22 | A | 23 | G | 24 | U | 25 | A | 26 | G | 27 | * | U | 60 | G | 61 | A | 62 | A | 63 | A | 64 | G | 65 | G | 66 | C | 67 | cWW | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
| 2 | IL_3DIL_003 | 3DIL | 0.0907 | 0 | 9x8 Sarcin-Ricin with GA cWW pair; G-bulge | A | RNA (174-MER) | G | 22 | A | 23 | U | 24 | G | 25 | A | 26 | G | 27 | U | 28 | A | 29 | G | 30 | * | U | 63 | G | 64 | A | 65 | A | 66 | A | 67 | G | 68 | G | 69 | C | 70 | cWW | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUGAGUAG*UGAAAGGC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGAGUA*GAAAGG | 2 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- 9x8 Sarcin-Ricin with GA cWW pair; G-bulge (2)
- Basepair signature
- cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L
- Heat map statistics
- Min 0.09 | Avg 0.05 | Max 0.09
Coloring options: