IL_1OND_009

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUUAGUAG*CGAACCC

Length

15 nucleotides

Bulged bases

1OND|1|0|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OND_009 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.1986

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

1OND|1|0|G|215
1OND|1|0|U|216
1OND|1|0|U|217
1OND|1|0|A|218
1OND|1|0|G|219
1OND|1|0|U|220
1OND|1|0|A|221
1OND|1|0|G|222
*
1OND|1|0|C|230
1OND|1|0|G|231
1OND|1|0|A|232
1OND|1|0|A|233
1OND|1|0|C|234
1OND|1|0|C|235
1OND|1|0|C|236

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains