IL_1OND_020

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGAAAC*GCGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OND_020 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.1743

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.2

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

7

Unit IDs

1OND|1|0|U|716
1OND|1|0|G|717
1OND|1|0|A|718
1OND|1|0|A|719
1OND|1|0|A|720
1OND|1|0|C|721
*
1OND|1|0|G|736
1OND|1|0|C|737
1OND|1|0|G|738
1OND|1|0|G|739
1OND|1|0|A|740
1OND|1|0|G|741

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains