IL_1OND_032

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCACUC*GAAAC

Length

11 nucleotides

Bulged bases

1OND|1|0|A|879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OND_032 not in the Motif Atlas

Geometric match to IL_4V9F_035

Geometric discrepancy: 0.3986

The information below is about IL_4V9F_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38603.1

Basepair signature

cWW-cWS-L-R-L-R-R-L-cWW

Number of instances in this motif group

2

Unit IDs

1OND|1|0|G|877
1OND|1|0|C|878
1OND|1|0|A|879
1OND|1|0|C|880
1OND|1|0|U|881
1OND|1|0|C|882
*
1OND|1|0|G|920
1OND|1|0|A|921
1OND|1|0|A|922
1OND|1|0|A|923
1OND|1|0|C|924

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains