IL_1OND_071

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

ACUUUG*CUGU

Length

10 nucleotides

Bulged bases

1OND|1|0|G|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OND_071 not in the Motif Atlas

Geometric match to IL_7RQB_067

Geometric discrepancy: 0.1729

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

1OND|1|0|A|1686
1OND|1|0|C|1687
1OND|1|0|U|1688
1OND|1|0|U|1689
1OND|1|0|U|1690
1OND|1|0|G|1691
*
1OND|1|0|C|1973
1OND|1|0|U|1974
1OND|1|0|G|1975
1OND|1|0|U|1976

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains