IL_1OND_077

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

1OND|1|0|A|1839, 1OND|1|0|A|1840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OND_077 not in the Motif Atlas

Homologous match to IL_7A0S_068

Geometric discrepancy: 0.3488

The information below is about IL_7A0S_068

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.3

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

25

Unit IDs

1OND|1|0|G|1838
1OND|1|0|A|1839
1OND|1|0|A|1840
1OND|1|0|G|1841
*
1OND|1|0|C|1876
1OND|1|0|C|1877

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains