IL_73108.3

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6	1-6	2-3	2-4	2-5	3-6	4-5
1	IL_1U9S_004	1U9S	0.4572	0	Major groove minor groove platform; mini C-loop	A	RNase P class A	C	164	A	165	A	166	G	167	*	C	133	G	134	cWW		cSH	ncWB		cWW
2	IL_1U9S_002	1U9S	0.4959	1	Major groove intercalation	A	RNase P class A	G	111	A	112	A	114	G	115	*	C	228	C	229	cWW					cWW
3	IL_7A0S_068	7A0S	0.3264	0	Major groove minor groove platform; mini C-loop	X	LSU rRNA	G	1838	A	1839	A	1840	G	1841	*	C	1876	C	1877	cWW				ncWS	cWW
4	IL_4WF9_126	4WF9	0.2524	0	Major groove minor groove platform; mini C-loop	Y	5S rRNA	G	49	A	50	A	51	G	52	*	C	28	C	29	ncWW	ncSH		ncWB	ncWS	cWW
5	IL_4V9F_103	4V9F	0.2394	0	Major groove minor groove platform; mini C-loop	9	5S rRNA	G	50	A	51	A	52	G	53	*	C	29	C	30	cWW	cSH		ncWB	cWS	cWW
6	IL_9DFE_112	9DFE	0.2280	0	Major groove minor groove platform; mini C-loop (H)	1B	5S rRNA	G	51	A	52	A	53	G	54	*	C	30	C	31	cWW	cSH		ncWB	cWS	cWW
7	IL_8QYX_167	8QYX	0.2310	0	Major groove minor groove platform; mini C-loop (H)	B2	5S rRNA	G	48	A	49	A	50	G	51	*	C	28	C	29	cWW	cSH		ncWB	cWS	cWW
8	IL_9E6Q_107	9E6Q	0.2307	0	Major groove minor groove platform; mini C-loop (H)	2	5S rRNA	G	54	A	55	A	56	G	57	*	C	34	C	35	cWW	cSH			ncWS	cWW
9	IL_9H3G_149	9H3G	0.2474	0	Major groove minor groove platform; mini C-loop (H)	C3	5S rRNA	G	48	C	49	A	50	G	51	*	C	28	C	29	cWW	cSH			cWS	cWW
10	IL_8B0X_173	8B0X	0.2503	0	Major groove minor groove platform; mini C-loop (H)	b	5S rRNA	G	51	A	52	A	53	G	54	*	C	30	C	31	cWW	cSH		ncWB	cWS	cWW
11	IL_9AXU_127	9AXU	0.2599	0	Major groove minor groove platform; mini C-loop (H)	3	5S rRNA	G	48	C	49	A	50	G	51	*	C	28	C	29	cWW	ncSH			cWS	cWW
12	IL_8P9A_412	8P9A	0.1662	0	Major groove minor groove platform; mini C-loop (H)	sR	SSU rRNA	G	802	A	803	A	804	U	805	*	A	746	C	747	cWW	cSH				cWW
13	IL_8CRE_428	8CRE	0.2061	0	Major groove minor groove platform; mini C-loop (H)	CM	SSU rRNA	G	786	A	787	A	788	U	789	*	A	731	C	732	cWW					cWW
14	IL_9H3G_192	9H3G	0.1640	0		h1	SSU rRNA	G	805	G	806	A	807	PSU	808	*	A	749	C	750	cWW				ncWS	cWW
15	IL_1S03_007	1S03	0.0307	0	Major groove minor groove platform; mini C-loop	B	47-MER	A	12	A	13	A	14	C	15	*	G	37	U	38	cWW	cSH	ncSH	ntWH	ncWS	cWW
16	IL_1S03_003	1S03	0.0000	0	Major groove minor groove platform; mini C-loop	A	47-MER	A	12	A	13	A	14	C	15	*	G	37	U	38	cWW	cSH	ncSH	ntWH	ncWS	cWW
17	IL_8B0X_028	8B0X	0.0903	0	Major groove minor groove platform; mini C-loop (H)	A	SSU rRNA	A	640	U	641	A	642	C	643	*	G	597	U	598	cWW	cSH	ncSH		ncWS	cWW
18	IL_4LFB_025	4LFB	0.1286	0	Major groove minor groove platform; mini C-loop	A	SSU rRNA	A	640	U	641	A	642	C	643	*	G	597	U	598	cWW	ncSH	ncSH		ncWS	cWW
19	IL_4PDB_002	4PDB	0.1116	0	Major groove minor groove platform; mini C-loop	I	SELEX RNA aptamer	A	24	U	25	A	26	U	27	*	A	14	U	15	cWW	ncSH			ncWS	cWW
20	IL_1I6U_002	1I6U	0.1337	0	Major groove minor groove platform; mini C-loop	C	16S RRNA FRAGMENT	A	24	U	25	A	26	C	27	*	G	12	U	13	cWW	cSH	ncSH		ncWS	cWW
21	IL_8B0X_135	8B0X	0.1319	0	Major groove minor groove platform; mini C-loop (H)	a	LSU rRNA	G	1848	A	1849	A	1850	G	1851	*	C	1897	C	1898	cWW	cSH		ncWB	ncWS	cWW
22	IL_8GLP_329	8GLP	0.2783	0		S2	SSU rRNA	G	860	A	861	A	862	PSU	863	*	A	802	C	803	cWW					cWW
23	IL_8GLP_070	8GLP	0.2976	0		L5	LSU rRNA	G	1753	U	1754	C	1755	U	1756	*	A	1776	C	1777	cWW	ncSH		ntSH		ncWW
24	IL_4WF9_072	4WF9	0.3786	0	Major groove minor groove platform; mini C-loop	X	LSU rRNA	G	1873	A	1874	A	1875	G	1876	*	C	1920	C	1921	ncWW					cWW
25	IL_4V9F_068	4V9F	0.4557	0	Major groove minor groove platform; mini C-loop	0	LSU rRNA	G	1902	U	1903	A	1904	U	1905	*	A	1934	C	1935	cWW					cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAAG*CC	9
AUAC*GU	3
GCAG*CC	2
GAAU*AC	2
AAAC*GU	2
CAAG*CG	1
GAAAG*CC	1
GGA(PSU)*AC	1
AUAU*AU	1
GAA(PSU)*AC	1
GUCU*AC	1
GUAU*AC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AA*	15
UA*	5
CA*	2
AAA*	1
GA*	1
UC*	1

Release history

Release	4.7
Date	2026-02-25
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_73108.3 Version IL_73108.3 of this group appears in releases 4.7 to 4.7 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_73108.3 Version IL_73108.3 of this group appears in releases 4.7 to 4.7

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Csv

Json