IL_1OND_088

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AUAG*CGGGU

Length

9 nucleotides

Bulged bases

1OND|1|0|G|2217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OND_088 not in the Motif Atlas

Geometric match to IL_4KZD_002

Geometric discrepancy: 0.3394

The information below is about IL_4KZD_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

1OND|1|0|A|2063
1OND|1|0|U|2064
1OND|1|0|A|2065
1OND|1|0|G|2066
*
1OND|1|0|C|2215
1OND|1|0|G|2216
1OND|1|0|G|2217
1OND|1|0|G|2218
1OND|1|0|U|2219

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains