IL_1OND_101

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAA*UGUAG

Length

8 nucleotides

Bulged bases

1OND|1|0|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OND_101 not in the Motif Atlas

Homologous match to IL_7A0S_080

Geometric discrepancy: 0.5941

The information below is about IL_7A0S_080

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_14250.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

11

Unit IDs

1OND|1|0|C|2276
1OND|1|0|A|2277
1OND|1|0|A|2278
*
1OND|1|0|U|2296
1OND|1|0|G|2297
1OND|1|0|U|2298
1OND|1|0|A|2299
1OND|1|0|G|2300

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains