IL_7A0S_080

3D structure

PDB id

7A0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Deinococcus radiodurans ribosome bounded with mycinamicin I

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

CAA*UGUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

7A0S|1|X|C|2276
7A0S|1|X|A|2277
7A0S|1|X|A|2278
*
7A0S|1|X|U|2296
7A0S|1|X|G|2297
7A0S|1|X|U|2298
7A0S|1|X|A|2299
7A0S|1|X|G|2300

Current chains

Chain X

RNA (2732-MER)

Nearby chains

Chain D

50S ribosomal protein L5

Chain L

50S ribosomal protein L18

Chain Y

5S ribosomal RNA; 5S rRNA