IL_1OND_115

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUGC*GUGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OND_115 not in the Motif Atlas

Geometric match to IL_4V88_461

Geometric discrepancy: 0.3188

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

1OND|1|0|U|2625
1OND|1|0|U|2626
1OND|1|0|G|2627
1OND|1|0|C|2628
*
1OND|1|0|G|2650
1OND|1|0|U|2651
1OND|1|0|G|2652
1OND|1|0|A|2653

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains