IL_1OND_121

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

1OND|1|0|A|2745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OND_121 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.2049

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

1OND|1|0|G|2717
1OND|1|0|A|2718
1OND|1|0|U|2719
1OND|1|0|A|2720
1OND|1|0|A|2721
1OND|1|0|C|2722
*
1OND|1|0|G|2742
1OND|1|0|G|2743
1OND|1|0|A|2744
1OND|1|0|A|2745
1OND|1|0|G|2746
1OND|1|0|C|2747

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains