IL_1OND_131

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCUAAG*CGAUGG

Length

12 nucleotides

Bulged bases

1OND|1|0|U|1392

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OND_131 not in the Motif Atlas

Geometric match to IL_7A0S_098

Geometric discrepancy: 0.2948

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

1OND|1|0|C|1363
1OND|1|0|C|1364
1OND|1|0|U|1365
1OND|1|0|A|1366
1OND|1|0|A|1367
1OND|1|0|G|1368
*
1OND|1|0|C|1389
1OND|1|0|G|1390
1OND|1|0|A|1391
1OND|1|0|U|1392
1OND|1|0|G|1393
1OND|1|0|G|1394

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains