IL_1OND_149

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UCAAGUGGAG*CGAAAUGAAG

Length

20 nucleotides

Bulged bases

1OND|1|0|G|1871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OND_149 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.4137

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

1OND|1|0|U|1843
1OND|1|0|C|1844
1OND|1|0|A|1845
1OND|1|0|A|1846
1OND|1|0|G|1847
1OND|1|0|U|1848
1OND|1|0|G|1849
1OND|1|0|G|1850
1OND|1|0|A|1851
1OND|1|0|G|1852
*
1OND|1|0|C|1865
1OND|1|0|G|1866
1OND|1|0|A|1867
1OND|1|0|A|1868
1OND|1|0|A|1869
1OND|1|0|U|1870
1OND|1|0|G|1871
1OND|1|0|A|1872
1OND|1|0|A|1873
1OND|1|0|G|1874

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains