IL_1OOA_001

3D structure

PDB id

1OOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF NF-kB(p50)2 COMPLEXED TO A HIGH-AFFINITY RNA APTAMER

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

AUA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AUA,UAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OOA_001 not in the Motif Atlas

Geometric match to IL_4KR9_001

Geometric discrepancy: 0.1173

The information below is about IL_4KR9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

1OOA|1|C|A|2
1OOA|1|C|U|3
1OOA|1|C|A|4
*
1OOA|1|C|U|26
1OOA|1|C|A|27
1OOA|1|C|U|28

Current chains

Chain C

RNA aptamer

Nearby chains

Chain A

Nuclear factor NF-kappa-B p105 subunit

Chain B

Nuclear factor NF-kappa-B p105 subunit

Chain D

RNA aptamer