IL_1OW9_013

3D structure

PDB id

1OW9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR Structure of the Active Conformation of the VS Ribozyme Cleavage Site

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GAC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAC,GUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OW9_013 not in the Motif Atlas

Geometric match to IL_2ZNI_001

Geometric discrepancy: 0.1718

The information below is about IL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

1OW9|11|A|G|8
1OW9|11|A|A|9
1OW9|11|A|C|10
*
1OW9|11|A|G|15
1OW9|11|A|U|16
1OW9|11|A|C|17

Current chains

Chain A

A mimic of the VS Ribozyme Hairpin Substrate

Nearby chains