IL_1P5M_098

3D structure

PDB id

1P5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution Structure of HCV IRES Domain IIa

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

1P5M|20|A|U|6

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1P5M_098 not in the Motif Atlas

Geometric match to IL_1S03_005

Geometric discrepancy: 0.3911

The information below is about IL_1S03_005

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

1P5M|20|A|G|5
1P5M|20|A|U|6
1P5M|20|A|G|7
*
1P5M|20|A|C|50
1P5M|20|A|C|51

Current chains

Chain A

55-MER

Nearby chains