IL_1P5O_053

3D structure

PDB id

1P5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution Structure of HCV IRES Domain II

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UC*GUG

Length

5 nucleotides

Bulged bases

1P5O|9|A|U|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1P5O_053 not in the Motif Atlas

Geometric match to IL_2A64_003

Geometric discrepancy: 0.3851

The information below is about IL_2A64_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

1P5O|9|A|U|19
1P5O|9|A|C|20
*
1P5O|9|A|G|63
1P5O|9|A|U|64
1P5O|9|A|G|65

Current chains

Chain A

77-MER

Nearby chains