1P5O Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1P5O_001 | 1/A/37:45 | No text annotation | geometric HL_4V9F_011 HL_75660.9 | |
| HL_1P5O_002 | 2/A/37:45 | No text annotation | geometric HL_2ZNI_001 HL_75660.9 | |
| HL_1P5O_003 | 3/A/37:45 | No text annotation | geometric HL_2ZNI_001 HL_75660.9 | |
| HL_1P5O_004 | 4/A/37:45 | No text annotation | geometric HL_2ZNI_001 HL_75660.9 | |
| HL_1P5O_005 | 5/A/37:45 | No text annotation | ||
| HL_1P5O_006 | 6/A/37:45 | No text annotation | ||
| HL_1P5O_007 | 7/A/37:45 | No text annotation | ||
| HL_1P5O_008 | 8/A/37:45 | No text annotation | geometric HL_7A0S_011 HL_75660.9 | |
| HL_1P5O_009 | 9/A/37:45 | No text annotation | geometric HL_2ZNI_001 HL_75660.9 | |
| HL_1P5O_010 | 10/A/37:45 | No text annotation | geometric HL_7RQB_011 NA | |
| HL_1P5O_011 | 11/A/37:45 | No text annotation | geometric HL_2ZNI_001 HL_75660.9 | |
| HL_1P5O_012 | 12/A/37:45 | No text annotation | geometric HL_7RQB_011 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1P5O_001 | 1/A/5:7, 1/A/72:73 | No text annotation | ||
| IL_1P5O_002 | 1/A/10:16, 1/A/68:69 | No text annotation | ||
| IL_1P5O_003 | 1/A/19:20, 1/A/63:65 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_1P5O_004 | 1/A/20:23, 1/A/60:63 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.3 | |
| IL_1P5O_005 | 1/A/25:27, 1/A/56:58 | Isolated non-canonical cWW pair | geometric IL_4J39_001 IL_01003.5 | |
| IL_1P5O_079 | 1/A/28:33, 1/A/49:55 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_4V9F_007 IL_02666.2 | |
| IL_1P5O_007 | 2/A/5:7, 2/A/72:73 | No text annotation | ||
| IL_1P5O_008 | 2/A/10:16, 2/A/68:69 | No text annotation | ||
| IL_1P5O_009 | 2/A/19:20, 2/A/63:65 | Single bulged U | geometric IL_6JQ5_003 IL_97561.6 | |
| IL_1P5O_010 | 2/A/20:23, 2/A/60:63 | Tandem non-canonical cWW pairs | geometric IL_280D_001 NA | |
| IL_1P5O_011 | 2/A/25:27, 2/A/56:58 | Isolated non-canonical cWW pair | geometric IL_4J39_001 IL_01003.5 | |
| IL_1P5O_012 | 2/A/28:33, 2/A/49:55 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_4V9F_007 IL_02666.2 | |
| IL_1P5O_013 | 3/A/5:7, 3/A/72:73 | Single bulged U | geometric IL_2R8S_004 IL_97561.6 | |
| IL_1P5O_014 | 3/A/10:16, 3/A/68:69 | No text annotation | ||
| IL_1P5O_015 | 3/A/19:20, 3/A/63:65 | Single bulged U | geometric IL_5J7L_298 NA | |
| IL_1P5O_016 | 3/A/20:23, 3/A/60:63 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.3 | |
| IL_1P5O_017 | 3/A/25:27, 3/A/56:58 | Isolated non-canonical cWW pair | geometric IL_2ZKO_001 IL_01003.5 | |
| IL_1P5O_018 | 3/A/28:33, 3/A/49:55 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_4V9F_007 IL_02666.2 | |
| IL_1P5O_020 | 4/A/5:7, 4/A/72:73 | No text annotation | ||
| IL_1P5O_021 | 4/A/10:16, 4/A/68:69 | No text annotation | ||
| IL_1P5O_022 | 4/A/19:20, 4/A/63:65 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_1P5O_023 | 4/A/20:23, 4/A/60:63 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.3 | |
| IL_1P5O_024 | 4/A/25:27, 4/A/56:58 | Isolated non-canonical cWW pair | geometric IL_1ZH5_001 IL_01003.5 | |
| IL_1P5O_025 | 4/A/28:33, 4/A/49:55 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_4V9F_007 IL_02666.2 | |
| IL_1P5O_027 | 5/A/5:7, 5/A/72:73 | No text annotation | ||
| IL_1P5O_028 | 5/A/10:16, 5/A/68:69 | No text annotation | ||
| IL_1P5O_029 | 5/A/19:20, 5/A/63:65 | Multiple bulged bases | geometric IL_1R3E_002 IL_05670.1 | |
| IL_1P5O_030 | 5/A/20:23, 5/A/60:63 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_71194.3 | |
| IL_1P5O_031 | 5/A/25:27, 5/A/56:58 | No text annotation | ||
| IL_1P5O_076 | 5/A/25:33, 5/A/49:58 | No text annotation | ||
| IL_1P5O_032 | 5/A/27:33, 5/A/49:56 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_4V9F_007 IL_02666.2 | |
| IL_1P5O_033 | 6/A/5:7, 6/A/72:73 | No text annotation | ||
| IL_1P5O_034 | 6/A/10:16, 6/A/68:69 | No text annotation | ||
| IL_1P5O_035 | 6/A/19:20, 6/A/63:65 | No text annotation | ||
| IL_1P5O_036 | 6/A/20:23, 6/A/60:63 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.3 | |
| IL_1P5O_037 | 6/A/25:27, 6/A/56:58 | Isolated non-canonical cWW pair | geometric IL_1ZH5_001 IL_01003.5 | |
| IL_1P5O_038 | 6/A/28:33, 6/A/49:55 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_5J7L_251 NA | |
| IL_1P5O_039 | 7/A/5:7, 7/A/72:73 | No text annotation | ||
| IL_1P5O_040 | 7/A/10:16, 7/A/68:69 | No text annotation | ||
| IL_1P5O_041 | 7/A/19:20, 7/A/63:65 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_1P5O_042 | 7/A/20:23, 7/A/60:63 | Tandem non-canonical cWW pairs | geometric IL_2PN3_004 IL_71194.3 | |
| IL_1P5O_043 | 7/A/25:27, 7/A/56:58 | Isolated non-canonical cWW pair | geometric IL_1ZH5_001 IL_01003.5 | |
| IL_1P5O_080 | 7/A/28:33, 7/A/49:55 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_4V9F_007 IL_02666.2 | |
| IL_1P5O_045 | 8/A/5:7, 8/A/72:73 | No text annotation | ||
| IL_1P5O_046 | 8/A/10:16, 8/A/68:69 | No text annotation | ||
| IL_1P5O_047 | 8/A/19:20, 8/A/63:65 | No text annotation | ||
| IL_1P5O_048 | 8/A/20:23, 8/A/60:63 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_71194.3 | |
| IL_1P5O_049 | 8/A/25:27, 8/A/56:58 | Isolated non-canonical cWW pair | geometric IL_4KNQ_003 IL_01003.5 | |
| IL_1P5O_050 | 8/A/28:33, 8/A/49:55 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_4V9F_007 IL_02666.2 | |
| IL_1P5O_051 | 9/A/5:7, 9/A/72:73 | Single bulged U | geometric IL_1S03_005 IL_97561.6 | |
| IL_1P5O_052 | 9/A/10:16, 9/A/68:69 | No text annotation | ||
| IL_1P5O_053 | 9/A/19:20, 9/A/63:65 | Single bulged U | geometric IL_2A64_003 IL_97561.6 | |
| IL_1P5O_054 | 9/A/20:23, 9/A/60:63 | Tandem non-canonical cWW pairs | geometric IL_280D_001 NA | |
| IL_1P5O_055 | 9/A/25:27, 9/A/56:58 | Isolated non-canonical cWW pair | geometric IL_1ZH5_001 IL_01003.5 | |
| IL_1P5O_056 | 9/A/28:33, 9/A/49:55 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_4V9F_007 IL_02666.2 | |
| IL_1P5O_057 | 10/A/5:7, 10/A/72:73 | No text annotation | ||
| IL_1P5O_058 | 10/A/10:16, 10/A/68:69 | No text annotation | ||
| IL_1P5O_059 | 10/A/19:20, 10/A/63:65 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_1P5O_060 | 10/A/20:23, 10/A/60:63 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_1P5O_061 | 10/A/25:27, 10/A/56:58 | Isolated non-canonical cWW pair | geometric IL_1ZH5_001 IL_01003.5 | |
| IL_1P5O_081 | 10/A/28:33, 10/A/49:55 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_4V9F_007 IL_02666.2 | |
| IL_1P5O_063 | 11/A/5:7, 11/A/72:73 | Single bulged U | geometric IL_1S03_005 IL_97561.6 | |
| IL_1P5O_064 | 11/A/10:16, 11/A/68:69 | No text annotation | ||
| IL_1P5O_065 | 11/A/19:20, 11/A/63:65 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_1P5O_066 | 11/A/20:23, 11/A/60:63 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.3 | |
| IL_1P5O_067 | 11/A/25:27, 11/A/56:58 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_1P5O_068 | 11/A/28:33, 11/A/49:55 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_4V9F_007 IL_02666.2 | |
| IL_1P5O_069 | 12/A/5:7, 12/A/72:73 | No text annotation | ||
| IL_1P5O_070 | 12/A/10:16, 12/A/68:69 | No text annotation | ||
| IL_1P5O_071 | 12/A/19:20, 12/A/63:65 | Single bulged U | geometric IL_2A64_003 IL_97561.6 | |
| IL_1P5O_072 | 12/A/20:23, 12/A/60:63 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.3 | |
| IL_1P5O_073 | 12/A/25:27, 12/A/56:58 | Isolated non-canonical cWW pair | geometric IL_4JGN_003 IL_01003.5 | |
| IL_1P5O_082 | 12/A/28:33, 12/A/49:55 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_4V9F_007 IL_02666.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1P5O_006 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | ||
| IL_1P5O_075 | No text annotation | ||
| IL_1P5O_019 | Isolated cWH basepair | ||
| IL_1P5O_026 | Isolated cWH basepair | ||
| IL_1P5O_077 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | ||
| IL_1P5O_044 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | ||
| IL_1P5O_078 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | ||
| IL_1P5O_062 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | ||
| IL_1P5O_074 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge |
Valid loops
No loops found
Problematic loops
No problematic loops
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