IL_1Q7Y_013

3D structure

PDB id

1Q7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CCdAP-Puromycin bound at the Peptidyl transferase center of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q7Y_013 not in the Motif Atlas

Geometric match to IL_4V9F_012

Geometric discrepancy: 0.0489

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

1Q7Y|1|A|C|290
1Q7Y|1|A|C|291
1Q7Y|1|A|G|292
1Q7Y|1|A|A|293
1Q7Y|1|A|C|294
1Q7Y|1|A|C|295
1Q7Y|1|A|G|296
*
1Q7Y|1|A|C|355
1Q7Y|1|A|C|356
1Q7Y|1|A|A|357
1Q7Y|1|A|G|358
1Q7Y|1|A|U|359
1Q7Y|1|A|A|360
1Q7Y|1|A|C|361
1Q7Y|1|A|G|362

Current chains

Chain A

23S ribosomal rna

Nearby chains