IL_1Q7Y_019

3D structure

PDB id

1Q7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CCdAP-Puromycin bound at the Peptidyl transferase center of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

ACGAAU*AGACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q7Y_019 not in the Motif Atlas

Homologous match to IL_4V9F_018

Geometric discrepancy: 0.0508

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

1Q7Y|1|A|A|562
1Q7Y|1|A|C|563
1Q7Y|1|A|G|564
1Q7Y|1|A|A|565
1Q7Y|1|A|A|566
1Q7Y|1|A|U|567
*
1Q7Y|1|A|A|591
1Q7Y|1|A|G|592
1Q7Y|1|A|A|593
1Q7Y|1|A|C|594
1Q7Y|1|A|U|595

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain X

50S ribosomal protein L30P

Chain Z

50S ribosomal protein L32E