IL_1Q7Y_020

3D structure

PDB id

1Q7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CCdAP-Puromycin bound at the Peptidyl transferase center of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGACCG*CCAGUAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q7Y_020 not in the Motif Atlas

Geometric match to IL_4V9F_019

Geometric discrepancy: 0.0558

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

1Q7Y|1|A|U|567
1Q7Y|1|A|G|568
1Q7Y|1|A|A|569
1Q7Y|1|A|C|570
1Q7Y|1|A|C|571
1Q7Y|1|A|G|572
*
1Q7Y|1|A|C|585
1Q7Y|1|A|C|586
1Q7Y|1|A|A|587
1Q7Y|1|A|G|588
1Q7Y|1|A|U|589
1Q7Y|1|A|A|590
1Q7Y|1|A|A|591

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain X

50S ribosomal protein L30P