IL_1Q7Y_065

3D structure

PDB id

1Q7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CCdAP-Puromycin bound at the Peptidyl transferase center of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGCAAAU*ACUCGUACG

Length

16 nucleotides

Bulged bases

1Q7Y|1|A|A|1857, 1Q7Y|1|A|C|1872, 1Q7Y|1|A|C|1876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q7Y_065 not in the Motif Atlas

Homologous match to IL_4V9F_065

Geometric discrepancy: 0.0589

The information below is about IL_4V9F_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

1Q7Y|1|A|C|1854
1Q7Y|1|A|G|1855
1Q7Y|1|A|C|1856
1Q7Y|1|A|A|1857
1Q7Y|1|A|A|1858
1Q7Y|1|A|A|1859
1Q7Y|1|A|U|1860
*
1Q7Y|1|A|A|1869
1Q7Y|1|A|C|1870
1Q7Y|1|A|U|1871
1Q7Y|1|A|C|1872
1Q7Y|1|A|G|1873
1Q7Y|1|A|U|1874
1Q7Y|1|A|A|1875
1Q7Y|1|A|C|1876
1Q7Y|1|A|G|1877

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 1

L37Ae 50S ribosomal protein

Chain C

50S ribosomal protein L2P