IL_1Q81_003

3D structure

PDB id

1Q81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of minihelix with 3' puromycin bound to A-site of the 50S ribosomal subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCG*CAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q81_003 not in the Motif Atlas

Homologous match to IL_4V9F_003

Geometric discrepancy: 0.0606

The information below is about IL_4V9F_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

1Q81|1|A|G|39
1Q81|1|A|C|40
1Q81|1|A|G|41
*
1Q81|1|A|C|440
1Q81|1|A|A|441
1Q81|1|A|A|442
1Q81|1|A|C|443

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 2

50S ribosomal protein L37e

Chain E

50S ribosomal protein L4E

Chain N

L15 Ribosomal Protein