IL_1Q81_020

3D structure

PDB id

1Q81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of minihelix with 3' puromycin bound to A-site of the 50S ribosomal subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UGACCG*CCAGUAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q81_020 not in the Motif Atlas

Homologous match to IL_4V9F_019

Geometric discrepancy: 0.0545

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

1Q81|1|A|U|567
1Q81|1|A|G|568
1Q81|1|A|A|569
1Q81|1|A|C|570
1Q81|1|A|C|571
1Q81|1|A|G|572
*
1Q81|1|A|C|585
1Q81|1|A|C|586
1Q81|1|A|A|587
1Q81|1|A|G|588
1Q81|1|A|U|589
1Q81|1|A|A|590
1Q81|1|A|A|591

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain X

50S ribosomal protein L30P