IL_1Q86_001

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGGAUU*AUGAAAU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q86_001 not in the Motif Atlas

Homologous match to IL_4V9F_001

Geometric discrepancy: 0.0368

The information below is about IL_4V9F_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

1Q86|1|A|G|21
1Q86|1|A|U|22
1Q86|1|A|G|23
1Q86|1|A|G|24
1Q86|1|A|A|25
1Q86|1|A|U|26
1Q86|1|A|U|27
*
1Q86|1|A|A|516
1Q86|1|A|U|517
1Q86|1|A|G|518
1Q86|1|A|A|519
1Q86|1|A|A|520
1Q86|1|A|A|521
1Q86|1|A|U|522

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain E

50S ribosomal protein L4E

Chain S

50S ribosomal protein L22P

Chain Z

50S ribosomal protein L32E