IL_1Q86_013

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q86_013 not in the Motif Atlas

Geometric match to IL_4V9F_012

Geometric discrepancy: 0.0431

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

1Q86|1|A|C|290
1Q86|1|A|C|291
1Q86|1|A|G|292
1Q86|1|A|A|293
1Q86|1|A|C|294
1Q86|1|A|C|295
1Q86|1|A|G|296
*
1Q86|1|A|C|355
1Q86|1|A|C|356
1Q86|1|A|A|357
1Q86|1|A|G|358
1Q86|1|A|U|359
1Q86|1|A|A|360
1Q86|1|A|C|361
1Q86|1|A|G|362

Current chains

Chain A

23S ribosomal rna

Nearby chains