IL_1Q86_019

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACGAAU*AGACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q86_019 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.0495

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

1Q86|1|A|A|562
1Q86|1|A|C|563
1Q86|1|A|G|564
1Q86|1|A|A|565
1Q86|1|A|A|566
1Q86|1|A|U|567
*
1Q86|1|A|A|591
1Q86|1|A|G|592
1Q86|1|A|A|593
1Q86|1|A|C|594
1Q86|1|A|U|595

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain X

50S ribosomal protein L30P

Chain Z

50S ribosomal protein L32E