IL_1Q86_048

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUGGAAG*UGGAC

Length

13 nucleotides

Bulged bases

1Q86|1|A|G|1315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q86_048 not in the Motif Atlas

Homologous match to IL_4V9F_048

Geometric discrepancy: 0.0419

The information below is about IL_4V9F_048

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

1Q86|1|A|G|1312
1Q86|1|A|A|1313
1Q86|1|A|U|1314
1Q86|1|A|G|1315
1Q86|1|A|G|1316
1Q86|1|A|A|1317
1Q86|1|A|A|1318
1Q86|1|A|G|1319
*
1Q86|1|A|U|1338
1Q86|1|A|G|1339
1Q86|1|A|G|1340
1Q86|1|A|A|1341
1Q86|1|A|C|1342

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain E

50S ribosomal protein L4E

Chain U

50S ribosomal protein L24P

Chain Z

50S ribosomal protein L32E