3D structure

PDB id
1Q86 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CGUAGUACCUUG*CUUG
Length
16 nucleotides
Bulged bases
1Q86|1|A|G|1979, 1Q86|1|A|U|1985, 1Q86|1|A|U|2004
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1Q86_071 not in the Motif Atlas
Geometric match to IL_4V9F_071
Geometric discrepancy: 0.0378
The information below is about IL_4V9F_071
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04332.3
Basepair signature
cWW-L-R-L-cWW-L-L-R-L-R-L
Number of instances in this motif group
2

Unit IDs

1Q86|1|A|C|1975
1Q86|1|A|G|1976
1Q86|1|A|U|1977
1Q86|1|A|A|1978
1Q86|1|A|G|1979
1Q86|1|A|U|1980
1Q86|1|A|A|1981
1Q86|1|A|C|1982
1Q86|1|A|C|1983
1Q86|1|A|U|1984
1Q86|1|A|U|1985
1Q86|1|A|G|1986
*
1Q86|1|A|C|2002
1Q86|1|A|U|2003
1Q86|1|A|U|2004
1Q86|1|A|G|2005

Current chains

Chain A
23S ribosomal rna

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2452 s