IL_1Q86_082

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUC*GGCUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q86_082 not in the Motif Atlas

Homologous match to IL_4V9F_084

Geometric discrepancy: 0.1021

The information below is about IL_4V9F_084

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

1Q86|1|A|G|2494
1Q86|1|A|U|2495
1Q86|1|A|C|2496
*
1Q86|1|A|G|2524
1Q86|1|A|G|2525
1Q86|1|A|C|2526
1Q86|1|A|U|2527
1Q86|1|A|U|2528

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 5

CCA-phenylalanine-cariotic-acid-biotin

Chain J

L10 Ribosomal Protein