IL_1Q86_101

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q86_101 not in the Motif Atlas

Homologous match to IL_4V9F_103

Geometric discrepancy: 0.0599

The information below is about IL_4V9F_103

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

1Q86|1|B|C|3029
1Q86|1|B|C|3030
*
1Q86|1|B|G|3050
1Q86|1|B|A|3051
1Q86|1|B|A|3052
1Q86|1|B|G|3053

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L5P

Chain O

50S ribosomal protein L18P