IL_1Q86_107

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGA*UACC

Length

8 nucleotides

Bulged bases

1Q86|1|A|G|1165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q86_107 not in the Motif Atlas

Homologous match to IL_4V9F_110

Geometric discrepancy: 0.1215

The information below is about IL_4V9F_110

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

1Q86|1|A|G|1163
1Q86|1|A|U|1164
1Q86|1|A|G|1165
1Q86|1|A|A|1166
*
1Q86|1|A|U|1180
1Q86|1|A|A|1181
1Q86|1|A|C|1182
1Q86|1|A|C|1183

Current chains

Chain A

23S ribosomal rna

Nearby chains