Motif IL_28482.1 Version IL_28482.1 of this group appears in releases 4.0 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_110 | 4V9F | 0.1812 | 1 | 0 | LSU rRNA | U | 1180 | A | 1181 | C | 1182 | C | 1183 | * | G | 1163 | U | 1164 | A | 1166 | ncWW | cWW |
| 2 | IL_5D8H_002 | 5D8H | 0.0947 | 1 | A | LSU rRNA | C | 1186 | A | 1187 | U | 1188 | C | 1189 | * | G | 1169 | U | 1170 | G | 1172 | cWW | cWW |
| 3 | IL_1MMS_003 | 1MMS | 0.0000 | 1 | D | LSU rRNA | C | 1076 | A | 1077 | U | 1078 | C | 1079 | * | G | 1059 | U | 1060 | G | 1062 | cWW | cWW |
| 4 | IL_6PRV_001 | 6PRV | 0.1201 | 1 | A | LSU rRNA | C | 1076 | A | 1077 | U | 1078 | C | 1079 | * | G | 1059 | U | 1060 | G | 1062 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUC*GUUG | 3 |
| UACC*GUGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*UU | 3 |
| AC*UG | 1 |
Release history
| Release | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 |
|---|---|---|---|---|---|---|---|
| Date | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.09 | Avg 0.12 | Max 0.25
Coloring options: