IL_1Q8N_009

3D structure

PDB id

1Q8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution Structure of the Malachite Green RNA Binding Aptamer

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GAC*GGUAAC

Length

9 nucleotides

Bulged bases

1Q8N|3|A|A|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q8N_009 not in the Motif Atlas

Geometric match to IL_8C3A_145

Geometric discrepancy: 0.3911

The information below is about IL_8C3A_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15052.3

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

1Q8N|3|A|G|8
1Q8N|3|A|A|9
1Q8N|3|A|C|10
*
1Q8N|3|A|G|23
1Q8N|3|A|G|24
1Q8N|3|A|U|25
1Q8N|3|A|A|26
1Q8N|3|A|A|27
1Q8N|3|A|C|28

Current chains

Chain A

RNA Aptamer

Nearby chains