Motif IL_15052.3 Version IL_15052.3 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-2 | 1-3 | 1-6 | 3-6 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8P9A_366 | 8P9A | 0.4645 | 0 | Minor groove platform (H) | AS | 5S rRNA | G | 49 | U | 50 | A | 51 | G | 52 | * | C | 28 | C | 29 | cWW | cWS | cWW | ||
| 2 | IL_8C3A_145 | 8C3A | 0.4587 | 0 | 3 | 5S rRNA | G | 49 | U | 50 | A | 51 | G | 52 | * | C | 28 | C | 29 | cWW | cWS | cWW | |||
| 3 | IL_5J7L_007 | 5J7L | 0.3090 | 0 | Minor groove platform | AA | SSU rRNA | U | 70 | A | 71 | A | 72 | C | 73 | * | G | 97 | A | 98 | ncSH | cWW | ncWS | cWW | |
| 4 | IL_5J7L_052 | 5J7L | 0.2473 | 0 | Minor groove platform | AA | SSU rRNA | C | 1129 | A | 1130 | G | 1131 | C | 1132 | * | G | 1142 | G | 1143 | cSH | cWW | cWW | ||
| 5 | IL_4LFB_049 | 4LFB | 0.2661 | 1 | Minor groove platform | A | SSU rRNA | C | 1128 | A | 1130 | G | 1131 | C | 1132 | * | G | 1142 | G | 1143 | cWW | ncWS | ncWW | ||
| 6 | IL_3MXH_005 | 3MXH | 0.0000 | 0 | Minor groove platform | R | c-di-GMP riboswitch | A | 61 | A | 62 | A | 63 | C | 64 | * | G | 76 | U | 77 | ncSH | cWW | cWW | ||
| 7 | IL_3IWN_005 | 3IWN | 0.1466 | 0 | Minor groove platform | A | C-di-GMP riboswitch | A | 51 | A | 52 | A | 53 | C | 54 | * | G | 71 | U | 72 | ncSH | cWW | ncWS | cWW | |
| 8 | IL_3RW6_001 | 3RW6 | 0.4167 | 0 | Minor groove platform | H | constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA | U | 53 | A | 54 | A | 55 | U | 56 | * | A | 7 | A | 8 | ncSH | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAG*CC | 2 |
| AAAC*GU | 2 |
| UAAC*GA | 1 |
| CAGC*GG | 1 |
| CCAGC*GG | 1 |
| UAAU*AA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA* | 4 |
| UA* | 2 |
| AG* | 1 |
| CAG* | 1 |
- Annotations
-
- Minor groove platform (6)
- (1)
- Minor groove platform (H) (1)
- Basepair signature
- cWW-L-cWW-L
- Heat map statistics
- Min 0.11 | Avg 0.34 | Max 0.57
Coloring options: