IL_1Q96_003

3D structure

PDB id

1Q96 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a mutant of the sarcin/ricin domain from rat 28S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

1.75 Å

Loop

Sequence

CUCAGUAU*AGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85647.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

25

Unit IDs

1Q96|1|C|C|6
1Q96|1|C|U|7
1Q96|1|C|C|8
1Q96|1|C|A|9
1Q96|1|C|G|10
1Q96|1|C|U|11
1Q96|1|C|A|12
1Q96|1|C|U|13
*
1Q96|1|C|A|18
1Q96|1|C|G|19
1Q96|1|C|A|20||A
1Q96|1|C|A|21||A
1Q96|1|C|C|22||A
1Q96|1|C|C|23
1Q96|1|C|G|24

Current chains

Chain C

sarcin/ricin 28S rRNA

Nearby chains

Chain A

sarcin/ricin 28S rRNA

Chain B

sarcin/ricin 28S rRNA