#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8break 9 10 11 12 13 14 151-152-143-123-134-125-66-76-117-108-9
1 IL_4IOA_0474IOA0.348508x7 Sarcin-Ricin; G-bulgeX LSU rRNAA1275U1276G1277A1278G1279U1280A1281A1282*U1994G1995A1996A1997A1998U1999U2000cWWcwWtSHcSHtWHtHScWW
2 IL_4QCN_0454QCN0.27620A23S Ribosomal RNAA1308U1309G1310A1311G1312U1313A1314A1315*U2033G2034A2035A2036A2037U2038U2039cWWcwWtSHtHHcSHtWHtHScWW
3 IL_2QBG_0482QBG0.28670B23S rRNAA1262U1263A1264A1265G1266U1267A1268A1269*U2011G2012A2013A2014A2015U2016U2017cWWcwWtSHtHHcSHtWHtHScWW
4 IL_1VW3_0381VW30.24840A21S ribosomal RNAA1295U1296G1297A1298G1299U1300A1301A1302*U1911G1912A1913A1914A1915U1916U1917cWWcwWtSHtHHcSHntWHtHScWW
5 IL_3U5H_1483U5H0.2713175S rRNAA72C74G75A76G77U78A79G80*C100G101A102A103A104C105U106cWWcWwtSHtHHcSHtWHtHScWW
6 IL_4CUV_1554CUV0.2803135S RRNAA72C74G75A76G77U78A79G80*C100G101A102A103A104C105U106cWWcWwtSHtHHncSHtWHtHScWW
7 IL_1S72_0061S720.200508x7 Sarcin-Ricin; G-bulge (H)0 LSU rRNAC171U172C173A174G175U176A177U178*A158G159A160A161C162U163G164cWWcwWtSHtHHcSHtWHtHScWW
8 IL_4IOA_0064IOA0.200808x7 Sarcin-Ricin; G-bulgeX LSU rRNAC178U179C180A181G182U183A184C185*G165G166A167A168C169U170G171cWWcwWntSHtHHcSHtWHtHScWW
9 IL_4QCN_0064QCN0.18370A23S Ribosomal RNAC190U191C192A193G194U195A196C197*G177G178A179A180C181U182G183cWWcwWtSHtHHcSHtWHtHScWW
10 IL_2QBG_0112QBG0.19200B23S rRNAC201U202A203A204G205U206A207C208*G188G189A190A191C192U193G194cWWcwWtSHtHHcSHtWHtHScWW
11 IL_1VW3_0111VW30.27390A21S ribosomal RNAC241U242A243A244G245U246A247A248*U228G229A230A231C232U233G234cWWcwWtSHtHHcSHntWWtHScWW
12 IL_4W21_1504W210.20130528S ribosomal RNAC4596U4597C4598A4599G4600U4601A4602C4603*G4608G4609A4610A4611C4612C4613G4614cWWtSHtHHcSHntWHtHScWW
13 IL_4CUV_1274CUV0.17540125S RRNAC3018U3019U3020A3021G3022U3023A3024C3025*G3030G3031A3032A3033C3034A3035G3036cWWtSHntHHcSHtWHtHScWW
14 IL_3U5H_1223U5H0.14870525S rRNAC3018U3019U3020A3021G3022U3023A3024C3025*G3030G3031A3032A3033C3034A3035G3036cWWtSHtHHcSHtWHtHScWW
15 IL_4A1B_1184A1B0.19470126S RRNAG3007U3008U3009A3010G3011U3012A3013C3014*G3019G3020A3021A3022C3023A3024C3025cWWntSHtHHtWHtHScWW
16 IL_1VX6_1441VX60.17480B5S ribosomal RNAG71C72U73A74G75U76A77C78*G98G99A100A101C102A103C104cWWcWWtSHtHHcSHtWHtHScWW
17 IL_1JBR_0011JBR0.089008x7 Sarcin-Ricin; G-bulgeC+FRNA (18-mer) + RNA (13-mer)C6U7C8A9G10U11A12C13*G18G19A20A21C22C23G24cWWtSHtHHcSHtWHtHScWW
18 IL_1Q96_0011Q960.000008x7 Sarcin-Ricin; G-bulgeAsarcin/ricin 28S rRNAC6U7C8A9G10U11A12U13*A18G19A20A21C22C23G24cWWtSHcSHtWHtHScWW
19 IL_1Q96_0031Q960.10180Csarcin/ricin 28S rRNAC6U7C8A9G10U11A12U13*A18G19A20||AA21||AC22||AC23G24cWWtSHtHHcSHtWHtHScWW
20 IL_4A1B_0034A1B0.15590126S RRNAC80C81C82A83G84U85A86A87*U95G96A97A98C99A100G101cWWncWWtSHtHHcSHtWHtHScWW
21 IL_4IOA_0074IOA0.182108x7 Sarcin-Ricin; G-bulgeX LSU rRNAG215U216U217A218G219U220A221G222*C230G231A232A233C234C235C236cWWtSHtHHcSHtWHtHScWW
22 IL_4W21_1744W210.1954075S ribosomal RNAG71U72U73A74G75U76A77C78*G98G99A100A101U102A103C104cWWntSHtHHcSHtWHtHScWW
23 IL_4A1C_0084A1C0.2124035S RRNAG71U72U73A74G75U76A77C78*G98G99A100A101G102U103C104cWWtHHncSHtWHtHScWW
24 IL_1VX6_0041VX60.24530A28S ribosomal RNAU82U83U84A85G86U87A88A89*U97G98A99A100C101A102A103cWWntSHtSWtHHcSHtWHtHScWW
25 IL_4W21_0064W210.28780528S ribosomal RNAC81U82C83A84G85U86A87A88*U96G97A98A99C100A101G102cWWntSHntSHcSHncWHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AUGAGUAA*UGAAAUU3
ACCGAGUAG*CGAAACU2
CUCAGUAC*GGAACUG2
CUCAGUAC*GGAACCG2
CUUAGUAC*GGAACAG2
CUCAGUAU*AGAACCG2
AUAAGUAA*UGAAAUU1
CUCAGUAU*AGAACUG1
CUAAGUAC*GGAACUG1
CUAAGUAA*UGAACUG1
GUUAGUAC*GGAACAC1
GCUAGUAC*GGAACAC1
CCCAGUAA*UGAACAG1
GUUAGUAG*CGAACCC1
GUUAGUAC*GGAAUAC1
GUUAGUAC*GGAAGUC1
UUUAGUAA*UGAACAA1
CUCAGUAA*UGAACAG1
Non-Watson-Crick part of the motif
SequenceCounts
UCAGUA*GAACC4
UUAGUA*GAACA4
UGAGUA*GAAAU3
UCAGUA*GAACU3
CCGAGUA*GAAAC2
UAAGUA*GAACU2
UAAGUA*GAAAU1
CUAGUA*GAACA1
CCAGUA*GAACA1
UUAGUA*GAACC1
UUAGUA*GAAUA1
UUAGUA*GAAGU1
UCAGUA*GAACA1

Release history

Release1.18
Date2014-10-07
StatusUpdated, 1 parent

Parent motifs

Children motifs

This motif has no children motifs.
Annotations
  • (19)
  • 8x7 Sarcin-Ricin; G-bulge (5)
  • 8x7 Sarcin-Ricin; G-bulge (H) (1)
  • Basepair signature
    cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
    Heat map statistics
    Min 0.06 | Avg 0.25 | Max 0.42
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