Motif IL_85647.7 Version IL_85647.7 of this group appears in releases 1.18 to 1.18
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 2-14 | 3-12 | 3-13 | 4-12 | 5-6 | 6-7 | 6-11 | 7-10 | 8-9 | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4IOA_047 | 4IOA | 0.3485 | 0 | 8x7 Sarcin-Ricin; G-bulge | X | LSU rRNA | A | 1275 | U | 1276 | G | 1277 | A | 1278 | G | 1279 | U | 1280 | A | 1281 | A | 1282 | * | U | 1994 | G | 1995 | A | 1996 | A | 1997 | A | 1998 | U | 1999 | U | 2000 | cWW | cwW | tSH | cSH | tWH | tHS | cWW | |||
2 | IL_4QCN_045 | 4QCN | 0.2762 | 0 | A | 23S Ribosomal RNA | A | 1308 | U | 1309 | G | 1310 | A | 1311 | G | 1312 | U | 1313 | A | 1314 | A | 1315 | * | U | 2033 | G | 2034 | A | 2035 | A | 2036 | A | 2037 | U | 2038 | U | 2039 | cWW | cwW | tSH | tHH | cSH | tWH | tHS | cWW | |||
3 | IL_2QBG_048 | 2QBG | 0.2867 | 0 | B | 23S rRNA | A | 1262 | U | 1263 | A | 1264 | A | 1265 | G | 1266 | U | 1267 | A | 1268 | A | 1269 | * | U | 2011 | G | 2012 | A | 2013 | A | 2014 | A | 2015 | U | 2016 | U | 2017 | cWW | cwW | tSH | tHH | cSH | tWH | tHS | cWW | |||
4 | IL_1VW3_038 | 1VW3 | 0.2484 | 0 | A | 21S ribosomal RNA | A | 1295 | U | 1296 | G | 1297 | A | 1298 | G | 1299 | U | 1300 | A | 1301 | A | 1302 | * | U | 1911 | G | 1912 | A | 1913 | A | 1914 | A | 1915 | U | 1916 | U | 1917 | cWW | cwW | tSH | tHH | cSH | ntWH | tHS | cWW | |||
5 | IL_3U5H_148 | 3U5H | 0.2713 | 1 | 7 | 5S rRNA | A | 72 | C | 74 | G | 75 | A | 76 | G | 77 | U | 78 | A | 79 | G | 80 | * | C | 100 | G | 101 | A | 102 | A | 103 | A | 104 | C | 105 | U | 106 | cWW | cWw | tSH | tHH | cSH | tWH | tHS | cWW | |||
6 | IL_4CUV_155 | 4CUV | 0.2803 | 1 | 3 | 5S RRNA | A | 72 | C | 74 | G | 75 | A | 76 | G | 77 | U | 78 | A | 79 | G | 80 | * | C | 100 | G | 101 | A | 102 | A | 103 | A | 104 | C | 105 | U | 106 | cWW | cWw | tSH | tHH | ncSH | tWH | tHS | cWW | |||
7 | IL_1S72_006 | 1S72 | 0.2005 | 0 | 8x7 Sarcin-Ricin; G-bulge (H) | 0 | LSU rRNA | C | 171 | U | 172 | C | 173 | A | 174 | G | 175 | U | 176 | A | 177 | U | 178 | * | A | 158 | G | 159 | A | 160 | A | 161 | C | 162 | U | 163 | G | 164 | cWW | cwW | tSH | tHH | cSH | tWH | tHS | cWW | ||
8 | IL_4IOA_006 | 4IOA | 0.2008 | 0 | 8x7 Sarcin-Ricin; G-bulge | X | LSU rRNA | C | 178 | U | 179 | C | 180 | A | 181 | G | 182 | U | 183 | A | 184 | C | 185 | * | G | 165 | G | 166 | A | 167 | A | 168 | C | 169 | U | 170 | G | 171 | cWW | cwW | ntSH | tHH | cSH | tWH | tHS | cWW | ||
9 | IL_4QCN_006 | 4QCN | 0.1837 | 0 | A | 23S Ribosomal RNA | C | 190 | U | 191 | C | 192 | A | 193 | G | 194 | U | 195 | A | 196 | C | 197 | * | G | 177 | G | 178 | A | 179 | A | 180 | C | 181 | U | 182 | G | 183 | cWW | cwW | tSH | tHH | cSH | tWH | tHS | cWW | |||
10 | IL_2QBG_011 | 2QBG | 0.1920 | 0 | B | 23S rRNA | C | 201 | U | 202 | A | 203 | A | 204 | G | 205 | U | 206 | A | 207 | C | 208 | * | G | 188 | G | 189 | A | 190 | A | 191 | C | 192 | U | 193 | G | 194 | cWW | cwW | tSH | tHH | cSH | tWH | tHS | cWW | |||
11 | IL_1VW3_011 | 1VW3 | 0.2739 | 0 | A | 21S ribosomal RNA | C | 241 | U | 242 | A | 243 | A | 244 | G | 245 | U | 246 | A | 247 | A | 248 | * | U | 228 | G | 229 | A | 230 | A | 231 | C | 232 | U | 233 | G | 234 | cWW | cwW | tSH | tHH | cSH | ntWW | tHS | cWW | |||
12 | IL_4W21_150 | 4W21 | 0.2013 | 0 | 5 | 28S ribosomal RNA | C | 4596 | U | 4597 | C | 4598 | A | 4599 | G | 4600 | U | 4601 | A | 4602 | C | 4603 | * | G | 4608 | G | 4609 | A | 4610 | A | 4611 | C | 4612 | C | 4613 | G | 4614 | cWW | tSH | tHH | cSH | ntWH | tHS | cWW | ||||
13 | IL_4CUV_127 | 4CUV | 0.1754 | 0 | 1 | 25S RRNA | C | 3018 | U | 3019 | U | 3020 | A | 3021 | G | 3022 | U | 3023 | A | 3024 | C | 3025 | * | G | 3030 | G | 3031 | A | 3032 | A | 3033 | C | 3034 | A | 3035 | G | 3036 | cWW | tSH | ntHH | cSH | tWH | tHS | cWW | ||||
14 | IL_3U5H_122 | 3U5H | 0.1487 | 0 | 5 | 25S rRNA | C | 3018 | U | 3019 | U | 3020 | A | 3021 | G | 3022 | U | 3023 | A | 3024 | C | 3025 | * | G | 3030 | G | 3031 | A | 3032 | A | 3033 | C | 3034 | A | 3035 | G | 3036 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | ||||
15 | IL_4A1B_118 | 4A1B | 0.1947 | 0 | 1 | 26S RRNA | G | 3007 | U | 3008 | U | 3009 | A | 3010 | G | 3011 | U | 3012 | A | 3013 | C | 3014 | * | G | 3019 | G | 3020 | A | 3021 | A | 3022 | C | 3023 | A | 3024 | C | 3025 | cWW | ntSH | tHH | tWH | tHS | cWW | |||||
16 | IL_1VX6_144 | 1VX6 | 0.1748 | 0 | B | 5S ribosomal RNA | G | 71 | C | 72 | U | 73 | A | 74 | G | 75 | U | 76 | A | 77 | C | 78 | * | G | 98 | G | 99 | A | 100 | A | 101 | C | 102 | A | 103 | C | 104 | cWW | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |||
17 | IL_1JBR_001 | 1JBR | 0.0890 | 0 | 8x7 Sarcin-Ricin; G-bulge | C+F | RNA (18-mer) + RNA (13-mer) | C | 6 | U | 7 | C | 8 | A | 9 | G | 10 | U | 11 | A | 12 | C | 13 | * | G | 18 | G | 19 | A | 20 | A | 21 | C | 22 | C | 23 | G | 24 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |||
18 | IL_1Q96_001 | 1Q96 | 0.0000 | 0 | 8x7 Sarcin-Ricin; G-bulge | A | sarcin/ricin 28S rRNA | C | 6 | U | 7 | C | 8 | A | 9 | G | 10 | U | 11 | A | 12 | U | 13 | * | A | 18 | G | 19 | A | 20 | A | 21 | C | 22 | C | 23 | G | 24 | cWW | tSH | cSH | tWH | tHS | cWW | ||||
19 | IL_1Q96_003 | 1Q96 | 0.1018 | 0 | C | sarcin/ricin 28S rRNA | C | 6 | U | 7 | C | 8 | A | 9 | G | 10 | U | 11 | A | 12 | U | 13 | * | A | 18 | G | 19 | A | 20||A | A | 21||A | C | 22||A | C | 23 | G | 24 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | ||||
20 | IL_4A1B_003 | 4A1B | 0.1559 | 0 | 1 | 26S RRNA | C | 80 | C | 81 | C | 82 | A | 83 | G | 84 | U | 85 | A | 86 | A | 87 | * | U | 95 | G | 96 | A | 97 | A | 98 | C | 99 | A | 100 | G | 101 | cWW | ncWW | tSH | tHH | cSH | tWH | tHS | cWW | |||
21 | IL_4IOA_007 | 4IOA | 0.1821 | 0 | 8x7 Sarcin-Ricin; G-bulge | X | LSU rRNA | G | 215 | U | 216 | U | 217 | A | 218 | G | 219 | U | 220 | A | 221 | G | 222 | * | C | 230 | G | 231 | A | 232 | A | 233 | C | 234 | C | 235 | C | 236 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |||
22 | IL_4W21_174 | 4W21 | 0.1954 | 0 | 7 | 5S ribosomal RNA | G | 71 | U | 72 | U | 73 | A | 74 | G | 75 | U | 76 | A | 77 | C | 78 | * | G | 98 | G | 99 | A | 100 | A | 101 | U | 102 | A | 103 | C | 104 | cWW | ntSH | tHH | cSH | tWH | tHS | cWW | ||||
23 | IL_4A1C_008 | 4A1C | 0.2124 | 0 | 3 | 5S RRNA | G | 71 | U | 72 | U | 73 | A | 74 | G | 75 | U | 76 | A | 77 | C | 78 | * | G | 98 | G | 99 | A | 100 | A | 101 | G | 102 | U | 103 | C | 104 | cWW | tHH | ncSH | tWH | tHS | cWW | |||||
24 | IL_1VX6_004 | 1VX6 | 0.2453 | 0 | A | 28S ribosomal RNA | U | 82 | U | 83 | U | 84 | A | 85 | G | 86 | U | 87 | A | 88 | A | 89 | * | U | 97 | G | 98 | A | 99 | A | 100 | C | 101 | A | 102 | A | 103 | cWW | ntSH | tSW | tHH | cSH | tWH | tHS | cWW | |||
25 | IL_4W21_006 | 4W21 | 0.2878 | 0 | 5 | 28S ribosomal RNA | C | 81 | U | 82 | C | 83 | A | 84 | G | 85 | U | 86 | A | 87 | A | 88 | * | U | 96 | G | 97 | A | 98 | A | 99 | C | 100 | A | 101 | G | 102 | cWW | ntSH | ntSH | cSH | ncWH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AUGAGUAA*UGAAAUU | 3 |
ACCGAGUAG*CGAAACU | 2 |
CUCAGUAC*GGAACUG | 2 |
CUCAGUAC*GGAACCG | 2 |
CUUAGUAC*GGAACAG | 2 |
CUCAGUAU*AGAACCG | 2 |
AUAAGUAA*UGAAAUU | 1 |
CUCAGUAU*AGAACUG | 1 |
CUAAGUAC*GGAACUG | 1 |
CUAAGUAA*UGAACUG | 1 |
GUUAGUAC*GGAACAC | 1 |
GCUAGUAC*GGAACAC | 1 |
CCCAGUAA*UGAACAG | 1 |
GUUAGUAG*CGAACCC | 1 |
GUUAGUAC*GGAAUAC | 1 |
GUUAGUAC*GGAAGUC | 1 |
UUUAGUAA*UGAACAA | 1 |
CUCAGUAA*UGAACAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UCAGUA*GAACC | 4 |
UUAGUA*GAACA | 4 |
UGAGUA*GAAAU | 3 |
UCAGUA*GAACU | 3 |
CCGAGUA*GAAAC | 2 |
UAAGUA*GAACU | 2 |
UAAGUA*GAAAU | 1 |
CUAGUA*GAACA | 1 |
CCAGUA*GAACA | 1 |
UUAGUA*GAACC | 1 |
UUAGUA*GAAUA | 1 |
UUAGUA*GAAGU | 1 |
UCAGUA*GAACA | 1 |
Release history
Release | 1.18 |
---|---|
Date | 2014-10-07 |
Status | Updated, 1 parent |
Parent motifs
Parent motif | Common motif instances | Only in IL_85647.7 | Only in the parent motif |
---|---|---|---|
IL_85647.6 Compare | IL_4A1C_008, IL_3U5H_148, IL_4A1B_118, IL_3U5H_122, IL_4QCN_045, IL_2QBG_048, IL_4QCN_006, IL_1S72_006, IL_1VX6_144, IL_1VX6_004, IL_4CUV_155, IL_4IOA_047, IL_4A1B_003, IL_2QBG_011, IL_4IOA_007, IL_4IOA_006, IL_1VW3_011, IL_1VW3_038, IL_1Q96_003, IL_1Q96_001, IL_1JBR_001, IL_4CUV_127 | IL_4W21_150, IL_4W21_174, IL_4W21_006 | IL_1VWW_164, IL_1VWW_144, IL_1VWW_093 |
Children motifs
This motif has no children motifs.- Annotations
-
- (19)
- 8x7 Sarcin-Ricin; G-bulge (5)
- 8x7 Sarcin-Ricin; G-bulge (H) (1)
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.06 | Avg 0.25 | Max 0.42
Coloring options: