IL_1Q9A_001

3D structure

PDB id

1Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolution

Experimental method

X-RAY DIFFRACTION

Resolution

1.04 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q9A_001 not in the Motif Atlas

Geometric match to IL_4V9F_019

Geometric discrepancy: 0.1379

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

1Q9A|1|A|C|2652
1Q9A|1|A|U|2653
1Q9A|1|A|A|2654
1Q9A|1|A|G|2655
1Q9A|1|A|U|2656
1Q9A|1|A|A|2657
1Q9A|1|A|C|2658
*
1Q9A|1|A|G|2663
1Q9A|1|A|G|2664
1Q9A|1|A|A|2665
1Q9A|1|A|C|2666
1Q9A|1|A|C|2667
1Q9A|1|A|G|2668

Current chains

Chain A

Sarcin/ricin 23S rRNA

Nearby chains