IL_1QVF_001
3D structure
- PDB id
- 1QVF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGGAUU*AUGAAAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1QVF_001 not in the Motif Atlas
- Homologous match to IL_4V9F_001
- Geometric discrepancy: 0.024
- The information below is about IL_4V9F_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
1QVF|1|0|G|21
1QVF|1|0|U|22
1QVF|1|0|G|23
1QVF|1|0|G|24
1QVF|1|0|A|25
1QVF|1|0|U|26
1QVF|1|0|U|27
*
1QVF|1|0|A|516
1QVF|1|0|U|517
1QVF|1|0|G|518
1QVF|1|0|A|519
1QVF|1|0|A|520
1QVF|1|0|A|521
1QVF|1|0|U|522
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain C
- 50S ribosomal protein L4E
- Chain Q
- 50S ribosomal protein L22P
- Chain X
- 50S ribosomal protein L32E
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