IL_1QVF_013

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVF_013 not in the Motif Atlas

Geometric match to IL_4V9F_012

Geometric discrepancy: 0.0405

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

1QVF|1|0|C|290
1QVF|1|0|C|291
1QVF|1|0|G|292
1QVF|1|0|A|293
1QVF|1|0|C|294
1QVF|1|0|C|295
1QVF|1|0|G|296
*
1QVF|1|0|C|355
1QVF|1|0|C|356
1QVF|1|0|A|357
1QVF|1|0|G|358
1QVF|1|0|U|359
1QVF|1|0|A|360
1QVF|1|0|C|361
1QVF|1|0|G|362

Current chains

Chain 0

23S ribosomal rna

Nearby chains