IL_1QVF_019

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACGAAU*AGACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVF_019 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.0359

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

1QVF|1|0|A|562
1QVF|1|0|C|563
1QVF|1|0|G|564
1QVF|1|0|A|565
1QVF|1|0|A|566
1QVF|1|0|U|567
*
1QVF|1|0|A|591
1QVF|1|0|G|592
1QVF|1|0|A|593
1QVF|1|0|C|594
1QVF|1|0|U|595

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain V

50S ribosomal protein L30P

Chain X

50S ribosomal protein L32E