3D structure

PDB id
1QVF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UGACCG*CCAGUAA
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1QVF_020 not in the Motif Atlas
Homologous match to IL_4V9F_019
Geometric discrepancy: 0.0487
The information below is about IL_4V9F_019
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_16458.4
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

1QVF|1|0|U|567
1QVF|1|0|G|568
1QVF|1|0|A|569
1QVF|1|0|C|570
1QVF|1|0|C|571
1QVF|1|0|G|572
*
1QVF|1|0|C|585
1QVF|1|0|C|586
1QVF|1|0|A|587
1QVF|1|0|G|588
1QVF|1|0|U|589
1QVF|1|0|A|590
1QVF|1|0|A|591

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain V
50S ribosomal protein L30P

Coloring options:


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