IL_1QVF_032

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCGAG*CGUUUGACG

Length

14 nucleotides

Bulged bases

1QVF|1|0|U|1029, 1QVF|1|0|U|1030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVF_032 not in the Motif Atlas

Homologous match to IL_4V9F_031

Geometric discrepancy: 0.0281

The information below is about IL_4V9F_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_94910.1

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

1QVF|1|0|C|936
1QVF|1|0|C|937
1QVF|1|0|G|938
1QVF|1|0|A|939
1QVF|1|0|G|940
*
1QVF|1|0|C|1026
1QVF|1|0|G|1027
1QVF|1|0|U|1028
1QVF|1|0|U|1029
1QVF|1|0|U|1030
1QVF|1|0|G|1031
1QVF|1|0|A|1032
1QVF|1|0|C|1033
1QVF|1|0|G|1034

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain N

50S ribosomal protein L18e

Chain P

50S ribosomal protein L21e

Chain V

50S ribosomal protein L30P