IL_1QVF_049

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUAGUAG*UGAACU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVF_049 not in the Motif Atlas

Homologous match to IL_4V9F_049

Geometric discrepancy: 0.0238

The information below is about IL_4V9F_049

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

1QVF|1|0|A|1367
1QVF|1|0|U|1368
1QVF|1|0|A|1369
1QVF|1|0|G|1370
1QVF|1|0|U|1371
1QVF|1|0|A|1372
1QVF|1|0|G|1373
*
1QVF|1|0|U|2052
1QVF|1|0|G|2053
1QVF|1|0|A|2054
1QVF|1|0|A|2055
1QVF|1|0|C|2056
1QVF|1|0|U|2057

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain C

50S ribosomal protein L4E

Chain Q

50S ribosomal protein L22P