IL_1QVF_050
3D structure
- PDB id
- 1QVF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1QVF_050 not in the Motif Atlas
- Homologous match to IL_4V9F_050
- Geometric discrepancy: 0.0355
- The information below is about IL_4V9F_050
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_50694.7
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 27
Unit IDs
1QVF|1|0|G|1416
1QVF|1|0|G|1417
1QVF|1|0|U|1418
1QVF|1|0|U|1419
*
1QVF|1|0|A|1678
1QVF|1|0|C|1679
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 1
- 50S ribosomal protein L39e
- Chain O
- 50S ribosomal protein L19E
- Chain R
- 50S ribosomal protein L23P
- Chain Z
- 50S ribosomal protein L37e
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