IL_1QVF_058

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGGAAG*CAGGAAG

Length

13 nucleotides

Bulged bases

1QVF|1|0|G|1604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVF_058 not in the Motif Atlas

Homologous match to IL_4V9F_058

Geometric discrepancy: 0.0494

The information below is about IL_4V9F_058

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_32016.1

Basepair signature

cWW-tSH-tSH-tSS-tHS-L-R-cWW

Number of instances in this motif group

1

Unit IDs

1QVF|1|0|U|1587
1QVF|1|0|G|1588
1QVF|1|0|G|1589
1QVF|1|0|A|1590
1QVF|1|0|A|1591
1QVF|1|0|G|1592
*
1QVF|1|0|C|1602
1QVF|1|0|A|1603
1QVF|1|0|G|1604
1QVF|1|0|G|1605
1QVF|1|0|A|1606
1QVF|1|0|A|1607
1QVF|1|0|G|1608

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain O

50S ribosomal protein L19E

Chain Y

L37Ae 50S ribosomal protein